Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRP | rs72749474 | chr1:198124732 | T/C | 1.35E-6 | 213 | 14.83 | 31.97 | 13.65 | KM Plot |
KIRP | rs72749475 | chr1:198125743 | A/C | 1.35E-6 | 213 | 14.83 | 31.97 | 13.65 | KM Plot |
KIRP | rs72767868 | chr16:646246 | G/A | 5.28E-5 | 209 | 16.53 | 14.7 | 7.02 | KM Plot |
KIRP | rs72769553 | chr16:19801023 | C/T | 1.18E-5 | 208 | 16.43 | 19.53 | 16.68 | KM Plot |
KIRP | rs72769573 | chr16:19841876 | G/C | 3.67E-5 | 208 | 15.88 | 16.68 | 16.68 | KM Plot |
KIRP | rs72769575 | chr16:19843517 | T/C | 3.67E-5 | 208 | 15.88 | 16.68 | 16.68 | KM Plot |
KIRP | rs72769581 | chr16:19846668 | T/C | 2.49E-6 | 205 | 14.47 | 19.5 | 12.23 | KM Plot |
KIRP | rs72769587 | chr16:19858906 | T/C | 4.14E-5 | 208 | 15.33 | 16.43 | 16.68 | KM Plot |
KIRP | rs72769590 | chr16:19864835 | C/T | 4.14E-5 | 208 | 15.33 | 16.43 | 16.68 | KM Plot |
KIRP | rs72771045 | chr16:19931114 | C/T | 0.000615 | 208 | 16.43 | 16.68 | 11.43 | KM Plot |
KIRP | rs72771047 | chr16:19931360 | G/A | 0.000611 | 209 | 16.45 | 15.2 | 11.43 | KM Plot |
KIRP | rs72771049 | chr16:19933511 | G/T | 0.000611 | 208 | 16.47 | 15.2 | 11.43 | KM Plot |
KIRP | rs72776692 | chr16:20441285 | T/G | 0.000361 | 211 | 16.45 | 16.72 | 1.73 | KM Plot |
KIRP | rs72776695 | chr16:20447288 | T/C | 0.000407 | 211 | 16.43 | 13.6 | 1.73 | KM Plot |
KIRP | rs72776697 | chr16:20454010 | G/T | 0.000386 | 212 | 16.43 | 13.6 | 5.88 | KM Plot |